Thomas Huber

Chemical Biologist and Computational Biophysicist

New York City Metropolitan Area

About

Research interests: • Signal Transduction, G Protein-Coupled Receptors, Molecular Pharmacology, Drug Discovery • Cancer, Genetics, Cell Biology, Metabolism • Visual System, Sensory Neuroscience • Chemical Biology, Genetic Code Expansion, Bioorthogonal Chemistry • Computational Biophysics, Molecular Dynamics, Docking, Free Energy Calculations • Biomembranes, Membrane Proteins, Physical Biochemistry, Spectroscopy • Single-molecule fluorescence, Fluorescence Labeling, Automated Microscopy, Engineering Other Qualifications: • Computational chemistry (namd, OpenMM, gromacs, Schrodinger suite, charmm, amber, gamess); programming languages (fluent: python, C++; proficient: java, Fortran, VBA); parallel computing (MPI, OpenMP, AWS); probabilistic programming (Mathematica; Bayesian modeling: PyMC; Markov state models: Enspara); visualization (python: Matplotlib, Seaborn, HoloViz; molecular: VMD, PyMOL; graphing: Microcal Origin, GraphPad Prism); automation (LabView, MicroManager); image analysis (Matlab, ImageJ/Fiji); machine learning (scikit-learn, PyTorch, TensorFlow, ollama LLMs); bioinformatics (general: MacVector; database mining: NCBI API; single-cell transcriptomics: Scanpy); productivity (Office suite, EndNote, ChemDraw, Adobe Illustrator/Photoshop) • Residential School on Medicinal Chemistry and Biology in Drug Discovery, Drew University 6/2022 • Schrödinger course certificates (Introduction to Molecular Modeling in Drug Discovery 5/2022, Introduction to Computational Antibody Engineering 6/2022, High-Throughput Virtual Screening for Hit Finding and Evaluation 9/2022) • Collaborative Institutional Training Initiative (CITI) Program certifications (2015-2024) for Basic Course, Human Research and Good Clinical Practices (GCP) Teaching experience: Seminar group leader within the program of preclinical education for medical students covering the entire field of Medical Biochemistry (72 hours per year), Institute for Physiological Chemistry, University of Munich.

Experience

  • The Rockefeller University (22 yrs 1 mo)
    • Senior Research Associate
      Apr 2020 - Present · 6 yrs 3 mos

    • Research Assistant Professor
      Mar 2013 - Mar 2020 · 7 yrs 1 mo

    • Research Associate
      Jun 2004 - Feb 2013 · 8 yrs 9 mos

  • Associate at Howard Hughes Medical Institute (HHMI)
    Nov 2002 - May 2004 · 1 yr 7 mos

  • Postdoctoral Research Fellow at The Rockefeller University
    Aug 2002 - Oct 2002 · 3 mos

  • Postdoctoral Research Fellow at University of Arizona
    Sep 2000 - Jul 2002 · 1 yr 11 mos

  • Ludwig-Maximilians-Universität München (Full-time · 5 yrs)
    • Postdoctoral Research Fellow
      Feb 1999 - Aug 2000 · 1 yr 7 mos

    • Scientific Assistant
      Sep 1995 - Jan 1999 · 3 yrs 5 mos